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hdbeukel avatar hdbeukel commented on August 13, 2024

Updated go-gene files:

Applied filters:

  • BP only
  • All available evidence types:
    • Maize v4: computational evidence only, in order of increasing number of annotations: IEA, ISO.
    • Maize v5: mostly computational evidence but also some curated and experimental,
      in order of increasing number of annotations: IC, RCA, IGI, ISS, TAS, IEP, IMP, IDA, IEA, IBA, ISO.
  • Discarded/replaced obsolete ids
  • Replaced alternate ids with corresponding primary id
  • Propagated to parental terms (extended)
  • Removed duplicate annotations
  • Very general annotations were discarded (GO terms with at least 1.000 annotated genes, after propagation)

from mini-ac.

hdbeukel avatar hdbeukel commented on August 13, 2024

Updated files without removing general terms (only BP root is removed):

Files have been gzipped because GitHub does not allow files with size >25MB to be attached to an issue.

from mini-ac.

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