Comments (2)
Updated go-gene files:
- Maize v4 (processed from PLAZA 4.5): zma_v4_go_gene_file.txt
- Maize v5 (processed from PLAZA 5): zma_v5_go_gene_file.txt
Applied filters:
- BP only
- All available evidence types:
- Maize v4: computational evidence only, in order of increasing number of annotations: IEA, ISO.
- Maize v5: mostly computational evidence but also some curated and experimental,
in order of increasing number of annotations: IC, RCA, IGI, ISS, TAS, IEP, IMP, IDA, IEA, IBA, ISO.
- Discarded/replaced obsolete ids
- Replaced alternate ids with corresponding primary id
- Propagated to parental terms (extended)
- Removed duplicate annotations
- Very general annotations were discarded (GO terms with at least 1.000 annotated genes, after propagation)
from mini-ac.
Updated files without removing general terms (only BP root is removed):
- Maize v4: zma_v4_go_gene_file.txt.gz
- Maize v5: zma_v5_go_gene_file.txt.gz
Files have been gzipped because GitHub does not allow files with size >25MB to be attached to an issue.
from mini-ac.
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