Ville Hoikkala's Projects
A python library for predicting phage lifestyle based on genome sequence
Snakemake pipeline for characterizing type III CRISPR-Cas loci and CorA encoding genes therein
Gene cluster comparison figure generator
Code for analysing data in Almeida & Hoikkala et al. 2021 (submitted)
Django application to add 'django-crispy-forms' layout objects for Bulma.io
Deploy the latest ghost v4 on Heroku
Scripts used to generate the data on Hoikkala, Graham and White paper on new type III CRISPR-Cas effectors
rn browser for development
Simple program for storing and manipulating short nucleotide sequences
Custom code for analyzing data in Hoikkala et al. 2021 (DOI: https://doi.org/10.1128/mBio.03338-20)
Config files for my GitHub profile.
General tools for genome assembly etc
Helper programs mainly associated with Phagenomics