Error :: unable to install requirements about colossus HOT 2 OPEN

Install the prerequsisites for building the psycopg2 package from source:

Debian/Ubuntu
Python 3
sudo apt install libpq-dev python3-dev

from colossus.

@julioriffel Even after running those commands it is failing...

Can you please check once? Thanks

Building wheels for collected packages: psycopg2-binary, typed-ast
Building wheel for psycopg2-binary (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/csestack/colossus/env_colossus/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-r35qkezm/psycopg2-binary/setup.py'"'"'; file='"'"'/tmp/pip-install-r35qkezm/psycopg2-binary/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fgcc8uvo
cwd: /tmp/pip-install-r35qkezm/psycopg2-binary/
Complete output (72 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/psycopg2
copying lib/errorcodes.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/extensions.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/extras.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/pool.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/psycopg1.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/sql.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/tz.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_ipaddress.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_json.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_range.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/init.py -> build/lib.linux-x86_64-3.8/psycopg2
creating build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/dbapi20.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/dbapi20_tpc.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/testconfig.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/testutils.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_async.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_async_keyword.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_bugX000.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_bug_gc.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_cancel.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_connection.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_copy.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_cursor.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_dates.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_errcodes.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_extras_dictcursor.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_fast_executemany.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_green.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_ipaddress.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_lobject.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_module.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_notify.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_psycopg2_dbapi20.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_quote.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_replication.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_sql.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_transaction.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_types_basic.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_types_extras.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_with.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/init.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
running build_ext
building 'psycopg2._psycopg' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/psycopg
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPSYCOPG_DEFAULT_PYDATETIME=1 -DPSYCOPG_VERSION=2.7.6.1 (dt dec pq3 ext lo64) -DPG_VERSION_NUM=120007 -DHAVE_LO64=1 -I/home/csestack/colossus/env_colossus/include -I/usr/include/python3.8 -I. -I/usr/include/postgresql -I/usr/include/postgresql/12/server -c psycopg/psycopgmodule.c -o build/temp.linux-x86_64-3.8/psycopg/psycopgmodule.o -Wdeclaration-after-statement
psycopg/psycopgmodule.c: In function ‘psyco_is_main_interp’:
psycopg/psycopgmodule.c:689:18: error: dereferencing pointer to incomplete type ‘PyInterpreterState’ {aka ‘struct _is’}
689 | while (interp->next)
| ^~

It appears you are missing some prerequisite to build the package from source.

You may install a binary package by installing 'psycopg2-binary' from PyPI.
If you want to install psycopg2 from source, please install the packages
required for the build and try again.

For further information please check the 'doc/src/install.rst' file (also at
http://initd.org/psycopg/docs/install.html).

error: command 'x86_64-linux-gnu-gcc' failed with exit status 1

ERROR: Failed building wheel for psycopg2-binary
Running setup.py clean for psycopg2-binary
Building wheel for typed-ast (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/csestack/colossus/env_colossus/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-r35qkezm/typed-ast/setup.py'"'"'; file='"'"'/tmp/pip-install-r35qkezm/typed-ast/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ff4eq69n
cwd: /tmp/pip-install-r35qkezm/typed-ast/
Complete output (23 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/typed_ast
copying typed_ast/ast27.py -> build/lib.linux-x86_64-3.8/typed_ast
copying typed_ast/ast3.py -> build/lib.linux-x86_64-3.8/typed_ast
copying typed_ast/conversions.py -> build/lib.linux-x86_64-3.8/typed_ast
copying typed_ast/init.py -> build/lib.linux-x86_64-3.8/typed_ast
running build_ext
building '_ast27' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/ast27
creating build/temp.linux-x86_64-3.8/ast27/Parser
creating build/temp.linux-x86_64-3.8/ast27/Python
creating build/temp.linux-x86_64-3.8/ast27/Custom
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iast27/Include -I/home/csestack/colossus/env_colossus/include -I/usr/include/python3.8 -c ast27/Parser/acceler.c -o build/temp.linux-x86_64-3.8/ast27/Parser/acceler.o
ast27/Parser/acceler.c:13:10: fatal error: pgenheaders.h: No such file or directory
13 | #include "pgenheaders.h"
| ^~~~~~~~~~~~~~~
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1

ERROR: Failed building wheel for typed-ast
Running setup.py clean for typed-ast
Failed to build psycopg2-binary typed-ast
Installing collected packages: psycopg2-binary, python-decouple, coverage, six, python-dateutil, text-unidecode, Faker, factory-boy, mccabe, pyflakes, pycodestyle, flake8, isort, filelock, py, pluggy, toml, distlib, appdirs, virtualenv, tox, typed-ast, mypy-extensions, mypy, wcwidth, prompt-toolkit, pickleshare, ipython-genutils, traitlets, parso, jedi, backcall, ptyprocess, pexpect, decorator, pygments, ipython
Attempting uninstall: psycopg2-binary
Found existing installation: psycopg2-binary 2.9.1
Uninstalling psycopg2-binary-2.9.1:
Successfully uninstalled psycopg2-binary-2.9.1
Running setup.py install for psycopg2-binary ... error
ERROR: Command errored out with exit status 1:
command: /home/csestack/colossus/env_colossus/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-r35qkezm/psycopg2-binary/setup.py'"'"'; file='"'"'/tmp/pip-install-r35qkezm/psycopg2-binary/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-zgskhvfd/install-record.txt --single-version-externally-managed --compile --install-headers /home/csestack/colossus/env_colossus/include/site/python3.8/psycopg2-binary
cwd: /tmp/pip-install-r35qkezm/psycopg2-binary/
Complete output (72 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/psycopg2
copying lib/errorcodes.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/extensions.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/extras.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/pool.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/psycopg1.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/sql.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/tz.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_ipaddress.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_json.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_range.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/init.py -> build/lib.linux-x86_64-3.8/psycopg2
creating build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/dbapi20.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/dbapi20_tpc.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/testconfig.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/testutils.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_async.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_async_keyword.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_bugX000.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_bug_gc.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_cancel.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_connection.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_copy.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_cursor.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_dates.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_errcodes.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_extras_dictcursor.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_fast_executemany.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_green.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_ipaddress.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_lobject.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_module.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_notify.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_psycopg2_dbapi20.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_quote.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_replication.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_sql.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_transaction.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_types_basic.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_types_extras.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_with.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/init.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
running build_ext
building 'psycopg2._psycopg' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/psycopg
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPSYCOPG_DEFAULT_PYDATETIME=1 -DPSYCOPG_VERSION=2.7.6.1 (dt dec pq3 ext lo64) -DPG_VERSION_NUM=120007 -DHAVE_LO64=1 -I/home/csestack/colossus/env_colossus/include -I/usr/include/python3.8 -I. -I/usr/include/postgresql -I/usr/include/postgresql/12/server -c psycopg/psycopgmodule.c -o build/temp.linux-x86_64-3.8/psycopg/psycopgmodule.o -Wdeclaration-after-statement
psycopg/psycopgmodule.c: In function ‘psyco_is_main_interp’:
psycopg/psycopgmodule.c:689:18: error: dereferencing pointer to incomplete type ‘PyInterpreterState’ {aka ‘struct _is’}
689 | while (interp->next)
| ^~

It appears you are missing some prerequisite to build the package from source.

You may install a binary package by installing 'psycopg2-binary' from PyPI.
If you want to install psycopg2 from source, please install the packages
required for the build and try again.

For further information please check the 'doc/src/install.rst' file (also at
<http://initd.org/psycopg/docs/install.html>).

error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------

Rolling back uninstall of psycopg2-binary
Moving to /home/csestack/colossus/env_colossus/lib/python3.8/site-packages/psycopg2/
from /home/csestack/colossus/env_colossus/lib/python3.8/site-packages/~sycopg2
Moving to /home/csestack/colossus/env_colossus/lib/python3.8/site-packages/psycopg2_binary-2.9.1.dist-info/
from /home/csestack/colossus/env_colossus/lib/python3.8/site-packages/~sycopg2_binary-2.9.1.dist-info
Moving to /home/csestack/colossus/env_colossus/lib/python3.8/site-packages/psycopg2_binary.libs/
from /home/csestack/colossus/env_colossus/lib/python3.8/site-packages/~sycopg2_binary.libs
ERROR: Command errored out with exit status 1: /home/csestack/colossus/env_colossus/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-r35qkezm/psycopg2-binary/setup.py'"'"'; file='"'"'/tmp/pip-install-r35qkezm/psycopg2-binary/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-zgskhvfd/install-record.txt --single-version-externally-managed --compile --install-headers /home/csestack/colossus/env_colossus/include/site/python3.8/psycopg2-binary Check the logs for full command output.

from colossus.