volker-baecker Goto Github PK
Name: Volker
Type: User
Company: Montpellier RIO Imaging
Twitter: VolkerBaecker
Location: Montpellier
Blog: www.mri.cnrs.fr
Name: Volker
Type: User
Company: Montpellier RIO Imaging
Twitter: VolkerBaecker
Location: Montpellier
Blog: www.mri.cnrs.fr
Singularity Image for Ilastik for the Advanced BioImage Analysis Workshop
Use the biaflows software to run and benchmark image-analysis-workflows from jupyter.
Base docker image containig fiji. To be used to create docker-images containing image analysis workflows.
Demo application for the 'Jenkins: The Definitive Guide' book
a test for learning to use github
A docker image to run the image analysis software icy in an x-environment, so that the grphical user interface can be used.
Icy kernel module
Segment clustered nuclei using a laplacian filter, thresholding and a binary watershed transform
dockerfile to build a docker image for ilastik
Open source scientific multidimensional image processing
The ImageJ wiki
ImageJ macros and scripts written at the imaging facility MRI
Material for the jupyter notebook workshop at mifobio 2018
Responsive, Two Column Documentation Layout With Markdown and CSS
MiNA (Mitochondrial Network Analysis) is a project aimed at making the analysis and characterization of mitochondrial network morphology more accurate, faster, and objective. This project currently consists of a set of Python scripts (and JAVA for the user interface) for the Fiji distribution of ImageJ.
GBI/ELIXIR/EuBI/NEUBIAS hackathon model case
napari: a fast, interactive, multi-dimensional image viewer for python
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
Docker image with FIJI and a headless imageJ macro to analyze clustered nuclei.
A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO
Workflow for nuclei segmentation/counting. To be used with BIAFLOWS
Track nuclei in a time-series using ImageJ. The algorithm does a 3D segmentation of the objects to accomplish the tracking.
A 3D spot detection workflow using fishquant2/BigFISH
A BIAFLOWS workflow for 3D spot detection
Wide field-nematode tracking platform
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.