waliii Goto Github PK

argo

ABA Imaging rig automation for the Gardner Lab

ca_source_extraction

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

cabmi

Calcium imaging BMI scripts for the 2P

cabmi_2d

Repo for 2D BMI analysis, data pointing, and figure generation

cabmi_scanimage

Closed loop Ca imaging scripts via ScanIMage

clancy

Some Scripts to analyze the Clancy paper data

dropout

For the Directed vs Undirected Paper

finchscope

Single photon tools for Neuroscience

fs_songbird

FreedomScope Scripts, specifically for analysis of songbird data

gridsearch

Using the grid mains to sync embedded systems with high precision

histologysegmentation3d

Segment 3D histology to identify cells that co-express multiple markers

imbat

Handling functions for wireless miniscope data

imbat_seq

Various functions for the ImBat Sequence project

jilab_bmi

closed loop code for Ji lab

jupyter-notebook

Notebooks for analysis, and some code associated with them.

lungdamage

Quantify tissue damage with ML

matlab-epsclean

Clean/Repair .eps PostScript vector files created by Matlab R2016b

movies

animated movies for readme docs

multiphoton

Gardner Lab LabView 2-Photon Microscope acquisition program

ncm

Code for NCM experiments

ner2019

Code for the conference paper "Local network coordination supports neuroprosthetic control" (Liberti et al 2019)

nhp4unme

Finding similarities in mice and "men"

organotypic

premotor

For Context Paper

recordingroom

Pull wav files from recording room

sleep

Functions for the zebra finch Sleep project

structured_illumination

thesis

Latex files for by PhD thesis (BU)

waliii.github.io

Personal Website: http://waliii.github.io

xfs

Freedomscope Analysis Pipeline for advanced users