wangn-plant-bio Goto Github PK

ahrd

High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.

allhic

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

ancestral_genome_reconstruction

Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO

anges

Reconstruction of ancestral genome maps

cac_genome

Customized code/script for the paper

chloroplast-genome-assembly

A pipeline for assemble chroloplast genome using short/long reads

dotplotly

Generate an interactive dot plot from mummer or minimap alignments

gene_info

get information about the number of introns and the length of genes from the GFF3 file

getorganelle

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

khaper

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

setaria-pan-genome

Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- genome studies, as well as demographic and genetic studies of Setaria.

telomeres_and_centromeres

This is a method to find telomeres and centromeres in plants.

tgg

tomato graph pangenome