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boss22

Bioinformatics Hub of Kenya Conference, 26-29 April 2022

breast_cancer_ctc

An RNA-Seq data analysis pipeline tutorial to reprocess data for breast cancer circulating tumor cells (CTC) from a recent study (PMID: 29868978)

cdr3_physicochem_analysis

Analyze the physicochemical properties of recovered VDJ sequences

data-mining

Data mining to discover trends in Open Science in Kenya

eupathdb-organismdb

Scripts to help automate the process of generator Bioconductor OrgDb, TranscriptDb, and OrganismDb packages for species hosted on EuPathDB

getting-started-with-open-source

intbt_2019

Training material for H3ABioNet 16S rRNA Microbiome Intermediate Bioinformatics Training 2019

intbt_2020

Training material for H3ABioNet 16S rRNA Microbiome Intermediate Bioinformatics Training 2020

introduction_to_linux

Linux introduction

landmacharia

Class assignment on the analysis of epidemiological data

learning_git

This repository is for learning git and github (beginner level)

learning_nextflow

Tutorial on how to use nextflow to create a workflow for blast

manuscript-shared-rnaseq

R and Rmarkdown code used across multiple RNA-Seq projects.

mount-kenya-university-bioinformatics-workshop-2022

A repository with data, scripts and results of the 1st Bioinformatics MKU workshop

myfirstfork

Fork this repository and make changes to the README

new_project

Template for a reproducible project's directory organization from SchlossLab

openscience_in_africa

BOSS mini project on evaluating the current status of open science in Africa

org.tb927.tritryp.db

Genome-wide annotation package for Trypanosoma brucei brucei TREU927

python-intermediate-inflammation

Learning python during the 'Research Software Camp: Next steps in coding' event organized by the Software Sustainability Institute

reproducibleresearchrstudio

This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.

sars-cov-2-genomics-and-bioinformatics-2024

An open-source project for creating online courses, built by P2PU

solving_rosalind_problems

Documentation of my solutions to Rosalind bioinformatics problems available at https://rosalind.info/problems/locations/

status-of-openscienceke-literaturesearch

Scan online literature databases for status of Open Science in Kenya

taxonomizr

Parse NCBI taxonomy and accessions to find taxonomix assignments

tbrucei_gcn

Code used in the analysis pipeline of T. brucei Gene Co-expression Network study

teachingjupyternotebooks

Training materials for the Open Science Workshop held in Nariobi

testing

Test Repo - Open Science Training

trypanosoma.brucei.treu927

Genome-wide annotation package for Trypanosoma brucei brucei TREU927

txdb.tbruceitreu927.tritryp43.genes

Transcript annotation package for Trypanosoma brucei brucei TREU927