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2pnerea

various scripts that support analysis of 2p data analyzed with fluoroSNNAP

adamacs

Architectures for data management and computational support. This is the central database architecture for the collaborative research center of the SFB1089.

anonymous

Example to blind the data make data anonymous while generating a corresponding folder

buctd

[ICCV 2023] "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity"

cambridgeneurotech_spikeinterface

utils to create probe maps for Cambridge Neurotech with SpikeInterface

co-tracker

CoTracker is a model for tracking any point (pixel) on a video.

coco-human-pose

Train a stacked hourglass deep neural network for human pose estimation on the COCO 2017 dataset.

collaboration_spikeanalysis

This repository keeps track of the progress of a collaboration and resources used with Lorenzon Fontolan for the spike analysis of Syngap

d_code

2Photon Imaging and Electrophysiology Analysis code for the Datta Lab @ HMS

datatonwb

Code for converting data into NWB format

dataviz

set of function for dataVizualization

deepinsight

A general framework for interpreting wide-band neural activity

dino

PyTorch code for Vision Transformers training with the Self-Supervised learning method DINO

dlc2nwb

Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.

domino

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

exploratree

exploratree is a Python program that allows you to save, search, and export directory tree structures. It provides functionality to store directory hierarchies, search for specific directories or files, and export the directory tree in different formats.

eztrack

Free, platform independent, behavior tracking software.

facemap

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

fastplotlib

A fast plotting library

fc-clip

This repo contains the code for our paper Convolutions Die Hard: Open-Vocabulary Segmentation with Single Frozen Convolutional CLIP

hibitplateformat

Format for the hibit luciferase to generate graphical output along with data formating for further processing

hsvideomanagement

imagej_wholebrainatlas

Package for ImageJ to have analysis output of RoiManagerX which is equivalent to ImageJ's native ROI manager with added functionality for brain mapping. And downstream analysis of the data

instagram-private-api

NodeJS Instagram private API SDK. Written in TypeScript.

instagram_private_api

A Python library to access Instagram's private API.

jasper2

Full-featured Jekyll port of Ghost's default theme Casper v2 👻

labutils

codes in different sections with general purpose application

lindoscope2023

Notebooks and code for the 2023 EMBO course on imaging and data analysis

meeting_notes

Notes about various meetings that are relevant to lab project