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analysis-tools

Code for analyzing data saved by the Open Ephys GUI

autopilot-external

External packages for Autopilot

autopilot-openephys

Open Ephys GUI with plugin architecture

autopilot-openephys-plugin

A plugin for open-ephys enabling the insertion of Cython into the open-ephys signal chain.

behavior

bootcamp_2018

ION bootcamp 2018

bootcamp_2020

djmaus

djmaus stimulus presentation system

imaq

image acquisition system for widefield imaging

kilosort

GPU code for spike sorting

labtools

general use python utility functions for the wehr lab

mike

phinephophiles

Speech Segmentation Tools

pi

pupil dilation and ball tracking

prey-capture

prey-capture-ssm

code for analyzing prey capture data using state space methods

prey_capture_python

current python translation of existing prey capture analysis code

pupellipse

Edge-based algorithm to measure pupil dilation

r_crash_course

saunderswehr-jasa2019

simpleclust

Manual spike clustering software for matlab

sortingqualitywehr

edited copy of cortex-lab/sortingQuality repository used by Wehr lab

speechcontext

plotting and analysis code for Sam's speech context effects experiments

spikes

cortex lab code for electrophysiology

svn-combopack

Exper and ratrix together at last... A git clone of the svn repo for Jonny's shitty computer

twarhmm_analysis

Contains code for analyzing observational mouse data with a timewarped ARHMM, generating statistics from the estimated states, and labeling videos for visualization.

wehrlab-datajoint