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2019carmon-reliabitycomparabilitystructuralcovariance

Code & data underlying Carmon et al. 2019

2020wang_tlefoldinghemi

afq

Automated Fiber Quantification

afq-pipeline

Flywheel Gear that runs the AFQ processing pipeline

ar-dcc_residual_analysis

autoregressive-dynamic conditional correlation model with residual analysis, Designed for fMRI analysis(Dynamic Functional Connectivity), useful for other applications too.

awesome-automl-papers

A curated list of automated machine learning papers, articles, tutorials, slides and projects

awesome-community-detection

A curated list of community detection research papers with implementations.

baumnetcoupling

Structure-function coupling in PNC brain networks

bigclam

Implements the bigCLAM algorithm

brain_states

Code to reproduce analysis for "Temporal sequences of brain activity at rest are constrained by white matter structure and modulated by cognitive demands"

brainage

brainage_tl

The scripts for generalizing the dMRI-based brain age prediction model to new data sources via transfer learning.

brainagepredictor

brainager

Software for generating a brain-predicted age value, using Gaussian Processes regression, implemented in R

braingraph

Graph theory analysis of brain MRI data

brainnetclass

brainpad

Predict brain age and calculate brain-predicted age difference scores from T1 MRIs

brainparts

NMF Code for calculating components from Brain imaging data.

brainstatedynamics-leida-informattheory

A repository with software to compute brain states and metrics of their state dynamics

bvar_connect

Bayesian multi-subject vector autoregressive (VAR) model for inference on effective brain connectivity based on resting-state functional MRI data.

calcfd

Calculate the fractal dimensionality of a 3D structure

cap_toolbox

cbig

circulargraph

Plot an interactive circular graph to illustrate connections in a network in MATLAB.

coleanticevicnetpartition

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

combinedfc

Repository for the combinedFC project (Sanchez-Romero & Cole, 2019) https://doi.org/10.1101/841890

commit

Linear framework to combine tractography and tissue micro-structure estimation with diffusion MRI

compare_matrices_to_assign_networks

consensus

Code to calculate a consensus matrix from a set of distance matrices using k-medoids

control_package