wenbinmei Goto Github PK

followers: 54.0 following: 112.0 repos: 66.0 gists: 1.0

Name: Wenbin Mei

Type: User

Bio: plant genomics, evolutionary genomics, alternative splicing, structural variation

Location: Cambridge, MA

Blog: https://wenbinmei.github.io

Wenbin Mei's Projects

git-flight-rules

Flight rules for git

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

jum

A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns

keras

Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.

keras-vis

Neural network visualization toolkit for keras

life891-2018

LIFE 891-002 Integrating Quantitative and Computational Biology into Life Sciences Research - Spring 2018

machine-learning-surveys

A curated list of Machine Learning Surveys, Tutorials and Books.

machine-learning-tutorials

machine learning and deep learning tutorials, articles and other resources

maize_v4_te_annotation

scripts and intermediate files used to annotate TEs in Jiao et al.

minidot

Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2

ml-from-scratch

Python implementations of Machine Learning models and algorithms from scratch. Aims to cover everything from Data Mining techniques to Deep Learning.

monocot_conserved_splicing

Research repo about Mei et al. (2017) Evolutionarily Conserved Alternative Splicing Across Monocots

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

numerical-linear-algebra

Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course

odgi

optimized dynamic genome graph implementation

oneliners

Useful bash one-liners for bioinformatics.

popgen-notes

Population genetics notes

practical_rl

A course in reinforcement learning in the wild

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

python

All Algorithms implemented in Python

python-machine-learning-book

The "Python Machine Learning (1st edition)" book code repository and info resource

pythondatasciencehandbook

Jupyter Notebooks for the Python Data Science Handbook

reinforcement-learning

Implementation of Reinforcement Learning Algorithms. Python, OpenAI Gym, Tensorflow. Exercises and Solutions to accompany Sutton's Book and David Silver's course.

rethinking

Statistical Rethinking course and book package

rilab.github.io

Ross-Ibarra Lab at UC Davis

scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

scikit-learn-videos

Jupyter notebooks from the scikit-learn video series

skill-sample-nodejs-fact

Build An Alexa Fact Skill

wenbinmei Goto Github PK

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