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baton

iRODS client programs and API

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

biobambam

Tools for bam file processing

biobambam2

Tools for early stage alignment file processing

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

c-maint

Maintenance scripts used with the htslib/samtools/bcftools repositories

fastk

A fast K-mer counter for high-fidelity shotgun datasets

htslib

C library for high-throughput sequencing data formats

htslib-plugins

Plugins for use with HTSlib

influxdb-c

io_lib

Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.

libmaus2

collection of data structures and algorithms

libs3

mpileup-tests

Test cases for mpileup variant calling

p5-influxdb

Perl client library for InfluxDB

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

tears

Stream files to and from iRODS

umi-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

verifybamid

www.htslib.org

The http://www.htslib.org/ web site