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Depeng Wang's Projects

athlon icon athlon

Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing

daligner icon daligner

Find all significant local alignments between reads

graphmap icon graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html

mashmap icon mashmap

A fast and approximate long read mapper

miniasm icon miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

smartdenovo icon smartdenovo

Ultra-fast de novo assembler using long noisy reads

wtdbg icon wtdbg

A fuzzy Bruijn graph approach to long noisy reads assembly

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