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autoscale-etcd

benchmarking

A benchmarking suite for Sanger's Genomics Workloads

ceph-disk-utils

Shell utilities for managing disks within ceph clusters

conda_samtools_development

This repository is to build samtools package from it's development branch using conda.

cromwell_wr_openstack

docker-create

Dockerfiles and configuration components for HPC Singularity and cloud use

duplicity-backup.sh

Bash wrapper script for automated backups with duplicity supporting Amazon's S3 online storage as well as other storage destinations (ftp, rsync, sftp, local storage...).

image-creation

image-creation-ci

irods-mermaid-trees

irods_migrate

tooling for bulk migration of data in iRODS using parallel iphymv

irods_testing

iseqfile

Drop-in replacement for a Sanger-specific imeta query for getting iRODS seq paths, to get the result fast.

letsencrypt-rgw

LetsEncrypt Support for the Ceph RADOS gateway

lsf-criu-integration

lsf-log-watch

LSF log watching via AMQP

lustre_precise_build

A packer build for a compile machine for lustre

mistral_benchmarking_cromwell_nextflow

mpirunp

Transparent wrapper for openmpi mpirun that finds good ports to use

mpistat

Efficiently lstat every file in a filesystem tree in parallel across multiple nodes using MPI.

objectbench

openstack-config

openstack-undercloud

os-cluster

os-cluster-internal-config

osdataproc

osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.

pcp

Parallel copy tool

pwalk

Parallel filesystem walking utilities and library.

secure-lustre

simple-image-builder