Giter VIP home page Giter VIP logo

Comments (1)

xihaoli avatar xihaoli commented on September 25, 2024

Hi Ferdinando,

Thanks for reaching out. For your questions:

(1) In STAARpipeline_Null_Model.r, the phenotype object is an R data frame consisting of the sample id, covariates, and the tested phenotype. The rows of the data frame represent different individuals, and the columns represent different variables. An example of the phenotype object can be found here.

(2) The sparse GRM can be calculated using standard approaches. An example pipeline for producing the sparse GRM from the gds file can be found here.

Please feel free to let me know if you have any additional questions. We are planning to include more explanations of the tutorial in the near future.

Best,
Xihao

from staarpipeline-tutorial.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.