Comments (1)
Hi Daniel,
Thanks for your question. Your understanding is correct; the user meant to generate GDS files on their input data using SeqArray (before using Varinfo_gds.R
). We have provided example scripts to convert VCF/BCF files to GDS files using the seqVCF2GDS or seqBCF2GDS functions in the SeqArray package. You may also use the seqBED2GDS or seqSNP2GDS functions to convert other file formats to the GDS format.
Best,
Xihao
from staarpipeline-tutorial.
Related Issues (20)
- fit_nullmodel Output is mostly Null and 0 HOT 16
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