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xryanglab's Projects

cscmap icon cscmap

cscMap is a bioinformatics pipeline to search for the RNA chimeras resulted from fusions of the transcripts encoded by the two opposite DNA strands.

deeplinc icon deeplinc

De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data

orfcalling icon orfcalling

A tutorial review of some methods for ORF calling

ribominer icon ribominer

a toolset for mining multi-dimensional features of the translatome with ribosome profiling data

roca icon roca

Reanalysis of ribosome profiling datasets reveals a novel function of rocaglamide A in perturbing the dynamics of translation elongation via eIF4A

scasl icon scasl

single-cell clustering based on alternative splicing landscapes

xtail icon xtail

Genome-wide assessment of differential translations with ribosome profiling data

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