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Matej Troják's Projects

bcsgen icon bcsgen

Biochemical Space language software tool

bioreactor icon bioreactor

mypPBR - minimalistic yet professional Photobioreactor

config icon config

Repository for storing own config files

ebcsgen icon ebcsgen

eBCSgen - BioChemical Space Language support tool.

formhtr icon formhtr

Handprint text recognition in form documents.

galaxy icon galaxy

Data intensive science for everyone.

matchms icon matchms

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

mspannotator icon mspannotator

Repository for tool that add more annotations (e.g. SMILES, InChI) to chemical identifiers based on CAS number.

networkvisual icon networkvisual

Script for visualizing reaction network using vis.js library.

pymspannotator icon pymspannotator

Repository for tool that adds more annotations (e.g. SMILES, InChI, CAS number) to MSP files (Python version).

ramclustr icon ramclustr

Assigning precursor-product ion relationships in indiscriminant MS/MS data

recetox-aplcms icon recetox-aplcms

This is a custom fork of apLCMS containing adaptations for large scale studies.

recetox-xmsannotator icon recetox-xmsannotator

This is a custom adaptation of the original version of xMSannotator. It is a complete rewrite of the original functionality, following the same program structure.

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tonesvisual icon tonesvisual

Script for visualisating given tones on the guitar neck

workflow-testing icon workflow-testing

Contains RECETOX workflows with automated tests against our instance at https://umsa.cerit-sc.cz/

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