xuexiaohua-bio Goto Github PK

facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

fastadmin

🤪 FastAPI + Vue构建的Mall项目后台管理

five-dollar-genome-analysis-pipeline

Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline

gatk4-data-processing

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

gatk4-germline-snps-indels

Workflows for germline short variant discovery with GATK4

genefuse

Gene fusion detection and visualization

go-daily-lib

Go 每日一库

goexample

golang example

gofpdf

A PDF document generator with high level support for text, drawing and images

hgvs

HGVS variant name parsing and generation

hlaminer

⛏HLA predictions from NGS shotgun data

hmzdelfinder

CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data

juliabyexample

Examples of Julia

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

lihang-code

《统计学习方法》的代码实现

lihang_algorithms

用python和sklearn两种方法实现李航《统计学习方法》中的算法

machine_learning_code_implementation

Mathematical derivation and pure Python code implementation of machine learning algorithms.

maverick

A Mendelian approach to variant effect prediction built in keras

mgefinder

A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mutalyzer

Tool suite for HGVS variant descriptions

nano-snakemake

A snakemake pipeline for SV analysis from nanopore genome sequencing

nextsv

ngscheckmate

Software program for checking sample matching for NGS data

nlp-roadmap

ROADMAP(Mind Map) and KEYWORD for students those who have interest in learning NLP

octopus

Bayesian haplotype-based mutation calling

omicverse

A python library for multi omics included bulk and single cell RNA-seq analysis.

oncocnv

ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

orthofinder

Phylogenetic orthology inference for comparative genomics

orthomcl-pipeline

Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/