xuqiang9042 Goto Github PK

aba_functional_networks

abams

Code to analyse the Brain Architecture Management System and Allen Brain Atlas datasets.

adsnps.github.io

allenbrainpy

Python package to analyze Allen Humap Brain genes expression

alleninf

Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.

alluvial

Alluvial diagrams

braininablender

An R package that allows the user to estimate the relative cell type balance in brain cortical samples using microarray or RNAseq data as presented in the manuscript "INFERENCE OF CELL-TYPE COMPOSITION FROM HUMAN BRAIN TRANSCRIPTOMIC DATASETS ILLUMINATES THE EFFECTS OF AGE, MANNER OF DEATH, DISSECTION, AND PSYCHIATRIC DIAGNOSIS" (http://biorxiv.org/content/early/2016/11/25/089391.full.pdf+html) by *Megan Hastings Hagenauer, Ph.D.1, Jun Z. Li, Ph.D.2, David M. Walsh, Psy.D.3, Marquis P. Vawter, Ph.D.3 Robert C. Thompson, Ph.D.1, Cortney A. Turner, Ph.D.1, William E. Bunney, M.D.3, Richard M. Myers, Ph.D.4, Jack D. Barchas, M.D.5, Alan F. Schatzberg, M.D.6, Stanley J. Watson, M.D., Ph.D.1, Huda Akil, Ph.D.1 1Mol. Behavioral Neurosci. Inst., Univ. of Michigan, Ann Arbor, MI, USA;  2Genet., Univ. of Michigan, Ann Arbor, MI, USA;  3Univ. of California, Irvine, CA; 4HudsonAlpha Inst. for Biotech., Huntsville, AL, USA; 5Stanford, Palo Alto, CA, 6Cornell, New York, NY, USA 

cerebroviz

combatharmonization

Harmonization of multi-site imaging data with ComBat

enigma

fiqt

FDR Inverse Quantile Transformation

frontiers_2014

Holds the code use in the "Which fMRI clustering gives good brain parcellations?" frontiers 2014 paper.

fusion_twas

methods for functional summary-based imputation

gecs

geneexpression_repository

Maps gene samples into surface parcellation

gretna

A Graph-theoretical Network Analysis Toolkit in MATLAB

iwas

ldsc

LD Score Regression (LDSC)

maybrain

Python based neuroimaging network analysis package

metaxcan

MetaXcan software and manuscript

mtag

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

neuroexpressoanalysis

Pre-print at: http://biorxiv.org/content/early/2016/11/26/089219

neurovault

Easy to use web database for statistical maps.

nsaba

Allen and Yarkoni sitting in a tree, C-O-D-I-N-G.

nspn_whitakervertes_pnas2016

Data and analysis code to reproduce the NSPN Manuscript "Adolescence is associated with genomically patterned consolidation of the hubs of the human brain connectome".

paintor_v3.0

Fast, integrative fine mapping with functional data

phewas_neuroimaging

PheWas Neuroimaging Tools

plsdepot

R package plsdepot

polyq

Co-expression analysis in Allen Human Brain Atlas

popcorn-t

Extension of brielin/Popcorn to use t-distribution for modeling allele substitution effect of SNPs