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caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

calcium-images-processing-tool

a matlab gui for processing 2 photon calcium imaging data

cellsort

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

course-content

Summer course content for Neuromatch Academy

exampledatasahre

Sharing data storage

grakel

A scikit-learn compatible library for graph kernels

imaging-data-processing

matlab

matlab_customcode

neural-assembly-detection

Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biology 16:143 (2018) doi: 10.1186/s12915-018-0606-4.

python-neural-network

This is an efficient implementation of a fully connected neural network in NumPy. The network can be trained by a variety of learning algorithms: backpropagation, resilient backpropagation and scaled conjugate gradient learning. The network has been developed with PYPY in mind.

rlfit

Simple Matlab code to fit reinforcement learning models to choice data

test_arduino