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2018dsb

2018 Data Science Bowl 2nd Place Solution

3d-periodic-table

3D Periodic Table Viewer

amr_curation

A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curation issues.

argmutation

argreview

argreview

biobloom

Create Bloom filters for a given reference and then to categorize sequences

blast2bam

cnnshapes

Visualizing intermediate activation in Convolutional Neural Networks with Keras

deepehr

Chronic Disease Prediction Using Medical Notes

digest

Suffix tree (suffix array with LCP) on disk

examples

TensorFlow examples

fast-index-for-pattern-search

fastgeneralizedsuffixarrays

A generalized Karkkainen-Sanders implementation in Python for building suffix arrays and trees for many strings in O(n)

fourier-transform

giw2019

Optimization of CARD

gsa-is

Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]

h-viewer

An android feed reader application which fetch data with selector and regular expression.

hands-on-learning

:sunflower: Learn by doing

hidden-markov-model

A from-scratch Hidden Markov Model for hidden state learning from observation sequences.

keras-deeplab-v3-plus

Keras implementation of Deeplab v3+ with pretrained weights

mcsmrt

Microbiome Classifier Pipeline for Pacific Biosciences 16s Data

mercat

MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data

metaannotator

Cluster-based for taxonomic annotation of metagenomic data

network_line_graph

Visualisation to compare different states of a network

nucleoveq

vector quantization for nucleotide sequences

ppi

Protein interaction network visualization and modeling

pysdsl

Python bindings to Succinct Data Structure Library 2.0

suffix_tree

This is the python module suffix_tree v2.1, python bindings for a C implementation of Generalized Suffix Trees. http://www.daimi.au.dk/~mailund/suffix_tree.html

taxasense

Taxasense: Fast and Sensitive Tool for Taxonomic Annotation of Metagenomic data with Wavelet Tree Index

ublastx_stageone

This is the source code for multisamples ARGs profiling using SARG2.0 database