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awesome-chatgpt-prompts

This repo includes ChatGPT promt curation to use ChatGPT better.

bioconda-recipes

Conda recipes for the bioconda channel.

co-phylog

Co-phylog: an assembly-free phylogenomic approach for closely related organisms

hash-prospector

Automated integer hash function discovery

klib

A standalone and lightweight C library

kssd_client

long-read-rna-pipeline

ENCODE long read RNA-seq pipeline

metakssd

nanosim

Nanopore sequence read simulator

phyx

phylogenetics tools for linux (and other mostly posix compliant) computers

public_kssd

K-mer substring space decomposition

salmon_kallisto_diffs

Salmon vs kallisto on GEUVADIS and SEQC

second_challenge_evaluation

Repository for codes, analyses and visualizations for the CAMI II challenges

shiptv

Standalone HTML interactive phylogenetic tree visualization powered by Phylocanvas and Javascript

sic-seq

Scripts used in the 2017 SiC-seq paper

splatter-paper

Data and analysis for the Splatter paper

sra_metadata

Get, parse, and extract information from the SRA metadata files

suitesparse

The official SuiteSparse library: a suite of sparse matrix algorithms authored or co-authored by Tim Davis, Texas A&M University

sylph

ultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.

tiny-test-data

Super small biological datasets for unit testing

tqsle

TQSLE v1.0 released

txt2onto

Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.

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