yhuang-thu Goto Github PK

adjusttext

A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

atomsk

Atomsk: A Tool For Manipulating And Converting Atomic Data Files -

cheatsheets-ai

Essential Cheat Sheets for deep learning and machine learning researchers https://medium.com/@kailashahirwar/essential-cheat-sheets-for-machine-learning-and-deep-learning-researchers-efb6a8ebd2e5

colorcet

A set of useful perceptually uniform colormaps for plotting scientific data

ffmpeg

Mirror of https://git.ffmpeg.org/ffmpeg.git

fftool

Tool to build force field input files for molecular simulation.

introtodeeplearning

Lab Materials for MIT 6.S191: Introduction to Deep Learning

lammps

Public development project of the LAMMPS MD software package

lammps-input-files

LAMMPS inputs and data files

lammps-input-python-codes

lammps input and python codes for file procession

lammps-tools

与LAMMPS有关的数据处理软件

lammps-tutorials

LAMMPS tutorials for Beginners

lammps_vscode

VSCODE extension for syntax highlighting of LAMMPS scripts

lammpstutorials

ligpargen

Command line tool providing BOSS generated OPLS-AA/CM1A(-LBCC) parameters for organic molecules and ligands.

ligpargen-1

A repository for tutorials and FAQ's about LigParGen

make-graphitics

matplotlib-and-seaborn-tutorial

tutorials for easy understanding of matplotlib and seaborn commands for graph plotting

matplotlib-cheatsheet

Matplotlib 3.1 cheat sheet.

mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

mdtraj

An open library for the analysis of molecular dynamics trajectories

mlp_neurosim_v2.0

Benchmark framework of synaptic device technologies for a simple neural network

mnist-handwritten-digit-recognition-with-cnn-in-python-using-keras

This project implements and explains Python code to recognize handwritten digits (MNIST dataset) with a CNN using Keras.

modelingneuralcircuits

PDF and Code to accompany the textbook "Modeling Neural Circuits Made Simple"

moltemplate

A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies

moviepy

Video editing with Python

obs-studio

OBS Studio - Free and open source software for live streaming and screen recording

oplsaa-db

Database of hand-built OPLS-AA parameters and topologies for 464 molecules. Zip files contains parameter and topologies for OpenMM, Gromacs, NAMD, CHARMM, LAMMPS, TINKER, CNS/X-PLOR, Q, DESMOND, BOSS and MCPRO.

particletracking-python

Python particle tracking code

pdfplumber

Plumb a PDF for detailed information about each char, rectangle, line, et cetera — and easily extract text and tables.