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biophys_optimize

Optimization of single-cell biophysically detailed models

bjitter

Matlab code for "Spike-centered jitter can mistake temporal structure", Platkiewicz, Stark, Amarasingham, Neural Computation, 2017, 29(3):783-803.

brainstorm3

Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology

buzcode

Code for internal lab sharing - polishing has started but is by no means complete

cm

data-driven-estimation

Neural model state and parameter estimation from data (Karoly et al 2018)

elephant

Elephant is the Electrophysiology Analysis Toolkit

examples

funpsy

FUNctional magnetic resonance imaging Phase SYnchronization

gramm

Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

invitro

Standard matlab toolbox for analyzing invitro data

machine-learning-i

Slides and lecture notes for the course 'machine learning I' taught at the Graduate School Neural Information Processing in Tuebingen.

mat_code

mril_codes

network-estimates

Simon's Feedforward Networks Code

neuronal-spike-sorting

Spike sorting codes and sorting of publicly available data sets

neurotune

ng

Make figures nicer in MATLAB with as few keystrokes as possible

pattern_formation_in_neural_circuits_by_traveling_waves_and_stdp

Matlab scripts for journal article

python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

resistingrhythm

A study of neural oscillations, with homeostasis.

rostami-ito-denker-gruen-2017

spike_finder

stat131

Lecture on state-space models of neural spiking activity.

torord

Repository for the cardiac model ToR-ORd

wave_clus

A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering

wavelets

Torrence & Compo Wavelet Analysis Software