yu-lab-vt Goto Github PK
Name: Yu Lab at Virginia Tech
Type: User
Company: Virginia Tech
Twitter: yu_guoqiang
Location: Arlington, VA
Yu Lab at Virginia Tech's Projects
aqua
An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
aqua-fiji
AQuA Fiji plugin
aqua2
Activity Quantification and Analysis for molecular spatiotemporal signals
aqua2-fiji
Fiji Implementation of AQuA2
bilco
BIdirectional pushing with Linear Component Operations, an efficient algorithm for solving joint alignment problem
cinda
Circulation Network based Data-association for Multi-object Tracking
cmc
A Conditional Multifactorial Contingency (CMC) model to jointly learn the multifactorial effect in large-scale data.
convexvst
A Convex Optimization Approach to Variance-stabilizing Transformation
cpp-function-library
This repository is a library of frequently used cpp functions.
fasp
Functional AStrocyte Phenotyping (FASP) is a Fiji plugin that automatically analyzes and characterizes the spatiotemporal functional status of astrocytes from time-lapse Ca2+ imaging data. FASP has been updated to analyze more complex data, especially in-vivo data. The new version is available upon request to Prof. Yu ([email protected]).
gtw
Graphical Time Warping
mussp
An exact and efficient min-cost flow algorithm for data-association in multi-object tracking
nis3d
A Completely Annotated Benchmark for Dense 3D Nuclei Image Segmentation
princut-auto
an unsupervised automatic 3D cell detector and manual annotation assistant
stardist
StarDist - Object Detection with Star-convex Shapes
synquant
A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.
synquant-data
Data sets used in SynQuant paper
whole-vnc-imaging-analysis
A whole-VNC functional imaging data analysis framework
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