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ai-projects

Artificial Intelligence projects, documentation and code.

awesome-machine-learning-cn

机器学习资源大全中文版，包括机器学习领域的框架、库以及软件

bings_code

share my own NGS tools

deeplearningbook-chinese

Deep Learning Book Chinese Translation

excel2latex

The Excel add-in for creating LaTeX tables

google-access-helper

谷歌访问助手破解版

meta-barcoding-dual-indexing

Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods

ngs

NGS Language Bindings

opencc

A project for conversion between Traditional and Simplified Chinese

pangea

Taxonomy-dependent 16S classification

pdf2images

convert pdf file to images

phd-thesis-template

A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)

picrust

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

pip

The PyPA recommended tool for installing Python packages

pubdata

Smart search engine for all bioinformatics databases worldwide

pyquickinstall

把国外PyPi源迅速切换化为国内源tuna, douban, aliyun, 从而加快python包的安装速度。

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

qiime-deploy-conf

configuration files to be used with the qiime-deploy packages

qiime2

Official repository for the QIIME 2 framework.

rdnatools

Analysis tools for rDNA seqencing using PacBio

rdptools

Collection of commonly used RDP Tools for easy building

readfq

Fast multi-line FASTA/Q reader in several programming languages

reseqtools

A Toolkit for analyzing next-generation DNA Re-Sequencing data

rinds

R package for the book "R in data science"

rmg-py

Python version of the amazing Reaction Mechanism Generator (RMG).

rnacocktail

rsem_tutorial

A short tutorial on how to use RSEM

rtax

Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene.

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data