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10x-scatac-2019

Code Repository for Satpathy Granja et al 2019

19spring-lab

adipogenesis-methylation

💻 Analysis codes and bioinformatic pipelines for paper "Targeted erasure of DNA methylation by TET3 drives adipogenic reprogramming and differentiation" (Park et al., Nature Metabolism. 2022)

admin-one-vue-tailwind

Free Vue.js 3.x Tailwind 3.x admin dashboard template with dark mode. Vite builds. Pinia state. Laravel integration available

adv360-pro-zmk

Production repository for the all-new Advantage360 Professional using ZMK engine

astro_test

awesome-tcga

Curated list of TCGA resources

beditor

A computational workflow for designing libraries of guide RNAs for CRISPR base editing

bedtools

A powerful toolset for genome arithmetic.

bioinfo-training_additional-tutorial

blog

blogdown

Create Blogs and Websites with R Markdown

brainchromatin

Code used to analyze single cell RNA and ATAC sequencing in developing human brain

cell-cell-interaction

Connectome analysis for Ligand-Receptor analysis for MuSC and endothelial cells

cellsnp

Pile up bi-allelic SNPs from single-cell and bulk RNA-seq data

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

cmrg-benchmarkset-manuscript

Code used to generate manuscript figures and results.

cvdc_scripts

scripts for analyzing the CVDC data.

dotfile

genomicspapers

The Leek group guide to genomics papers

go-class-build

Docker build example (using sort animation)

grind75

gtf_last_exon_filter

A Pythonscript, which only copies the last exons of every transcript.

hic-data-analysis-bootcamp

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

hic-pipeline

hic_pipeline

A easy-to-use Hi-C data processing software supporting distributed computation.

hicar_tools

hicartools

hicbricks

HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.

hicdcplus

HiCDCPlus