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2019-single-cell-rna-sequencing-workshop-ucd_ucsf

2019 single cell RNA sequencing Workshop @ UCD AND UCSF

autoborutarf

awesome-multi-omics

List of software packages for multi-omics analysis

awesome-network-analysis

A curated list of awesome network analysis resources.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bgcr_analysis

This folder contains the code and data used to perform the simulation studies and the applications for BGCR.

biobakery

bioBakery tools for meta'omic profiling

causal_microbiome_tutorial

Causal inference framework for environment-microbiome data applied to American Gut data.

cibookex-r

Causal Inference: What If. R and Stata code for Exercises

citeseq_autoencoder

Integrative analysis of single-cell multi-omics data using deep learning

classifier

RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

coda-pca

R code associated to "Representation Learning of Compositional Data", NIPS 2018

coda-penalized-regression

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

deconv_benchmark

dge_workshop_salmon

dwls

Gene expression deconvolution using dampened weighted least squares

enar2021-workshop

Workshop materials for "Targeted Learning in the tlverse: Causal Inference Meets Machine Learning" at the 2021 Spring Meeting of the Eastern North American Region (ENAR) of the International Biometric Society

figaro

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

grf

Generalized Random Forests

gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

guideline-for-computational-biology-and-bioinformatics

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

h2o-tutorials

Tutorials and training material for the H2O Machine Learning Platform

hte

humanpilot

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

in-depth-ngs-data-analysis-course

metaboanalystr

R package for MetaboAnalyst

metaboanalystr-1