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advent_of_code_2022

Advent of code, solutions in Rust

advent_of_code_2023

antismash-mibig

"mibig mode" antiSMASH implementation

aws-batch-genomics

Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.

bacass

Simple bacterial assembly and annotation pipeline.

benchling-api

A python wrapper for the benchling api

codmer

COmpositional Data analysis for Microbial Ecology in R (placeholder name until we think of something better)

comppls

An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data

conkat_seq

deepsimulator

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

degenerateprimertools

Utilities for Creating and Validating Degenerate primers

docker-mdns

Simple mDNS/ZeroConf demonstration of a nginx container, acessible at http://nginx.local

example-irlba

Example package for calling irlba from Rcpp

fast-nca

Fast implementation of the Neighborhood Component Analysis algorithm

fgw

Code for Optimal Transport for structured data with application on graphs

gfs_archiver

Gaiden Force Slack Archiver

gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

gradkcca

Implementations of gradKCCA

himphaseii

huge

High-Dimensional Undirected Graph Estimation

indextree

Arena based tree 🌲 structure by using indices instead of reference counted pointers

irlba

Fast truncated singular value decompositions

latentcor

latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary).

linfa

A Rust machine learning framework.

metamaps

Long-read metagenomic analysis

metis

Helpers for Accessing and Querying Amazon Athena using R, Including a lightweight RJDBC shim

metric-learn

Metric learning algorithms in Python

mibig-html

mibig-json

Repository to track changes in MIBiG curation data stored in JSON format

micromamba-docker

Micromamba for fast building of small conda-based containers