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barcodetrackr

barcodetrackR: an R package and app for tracking cellular barcode experiments.

cas9fatemapping

Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system

cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

crispr_recorders_sims

This repository will contain the scripts from the work "Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?"

dutracer

Relevant scripts for DuTracer paper

findconservedproteinvariant

Looking for conserved protein variants between zebrafish and human which are suitable for C to T base editing

geo-seq

hierarchical clustering of coordinate-seq data

itracer

Scripts to analyze iTracer data

larry_whitelist_v2

This script is to generate a LARRY library barcode whitelist from two sequenced PCRs of lentiviral library plasmid

nmo_project

scripts for plotting

polylox

python_codes

python code for Bioinformatic strongfold

rnaseq-analysis-project

Some notes and R transcripts for drug Project at ucla

rnaseq_for_thesis

RNAseq related

rpbpbr

Retrieving Polylox Barcodes from PacBio Reads (RPBPBR)

sc_gestalt

GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing

scscartrace