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awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

bigdata18

Transfer learning for time series classification

biotda

List of Resources for Topological Data Analysis in Bioinformatics and Artificial Intelligence

chia-pet2

a versatile and flexible pipeline for analysing different variants of ChIA-PET data

cnn_tsc

A CNN for time-series classification

cnv

connectome

Web tool for exploring cell-cell ligand-receptor mediated communication networks

dl-4-tsc

Deep Learning for Time Series Classification

findpeaks

A simple algorithm to find local maxima/minima in sequential data

gephi-toolkit

Gephi Toolkit - https://gephi.org/toolkit

ggrastr

Raster geoms for ggplot2

hemascope_tutorial

The tutorial for HemaScope toolkit.

hemascoper

A Specialized Bioinformatics Toolkit Designed for Analyzing both Single-cell and Spatial Transcriptome Sequencing Data from Hematopoietic Cells

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hic_tools

A collection of tools for Hi-C data analysis

hicpipe

an efficient Hi-C data processing pipeline

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

mad-gans

Applied generative adversarial networks (GANs) to do anomaly detection for time series data

magan

markovhc

my_wgcna

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

rayshader

R Package for Producing and Visualizing Hillshaded Maps from Elevation Matrices, in 2D and 3D

rgan

Recurrent (conditional) generative adversarial networks for generating real-valued time series data.

sc3-paper-figures

Scripts to recreate figures from the SC3 paper

scrna.seq.course

Analysis of single cell RNA-seq data course

scrna_smart_seq2

scrnaseq-xy

skylab

Secondary analysis pipelines