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zhk8111's Projects

bedtools2 icon bedtools2

bedtools - the swiss army knife for genome arithmetic

diamond icon diamond

Accelerated BLAST compatible local sequence aligner.

ensembl-vep icon ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

kraken2 icon kraken2

The second version of the Kraken taxonomic sequence classification system

libpll-2 icon libpll-2

Phylogenetic Likelihood Library 2 - experimental

megahit icon megahit

Ultra-fast and memory-efficient (meta-)genome assembler

mixcr icon mixcr

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

msisensor-pro icon msisensor-pro

Microsatellite Instability (MSI) detection using high-throughput sequencing data.

mupexi icon mupexi

MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.

pll-modules icon pll-modules

High Level modules for the Low Level Phylogenetic Likelihood Library

prokka icon prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

tensorflow icon tensorflow

An Open Source Machine Learning Framework for Everyone

trimal icon trimal

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

vcf2maf icon vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

vdjtools icon vdjtools

Post-analysis of immune repertoire sequencing data

vep_plugins icon vep_plugins

Plugins for the Ensembl Variant Effect Predictor (VEP)

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