zhssakura Goto Github PK

binning_refiner

cdhit

Automatically exported from code.google.com/p/cdhit

checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

comparem

A toolbox for comparative genomics.

emirge

EMIRGE reconstructs full length ribosomal genes from short read sequencing data.

enrichm

for_share

Scripts

gapseq

illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

jgi-query

A simple command-line tool to download data from the Joint Genome Institute's database

julie

kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

katana_cmds

matam

Mapping-Assisted Targeted-Assembly for Metagenomics

megahit

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

megan-ce

MEGAN Community Edition

metaboanalystr

R package for MetaboAnalyst

mmvec

Neural networks for microbe-metabolite interaction analysis

modelseed-ui

ModelSEED UI (beta)

modelseeddatabase

This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

r_scripts

My plot examples in R

reago

an assembly tool for 16S ribosomal RNA recovery from metagenomic data

reago-1.1

regexr

RegExr is a HTML/JS based tool for creating, testing, and learning about Regular Expressions.

spongeemp

the sponge microbiome database

sra-tools

SRA Tools

standard-raxml

sty8

About Eight GRMs for the microbiome of the sponge Stalissa sp.

swc