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Zidan Zhang's Projects

acfcalculator icon acfcalculator

This code is used to calculate autocorrelations functions of time series calculated using molecular simulation codes like NAMD.

chemlab icon chemlab

Reactive molecular dynamic framework

csg icon csg

coarse-graining module

espressopp icon espressopp

Modified version of ESPResSo++ to support simulation of complex chemical reactions at coarse-grained scale

gmx-tools icon gmx-tools

Assorted Python Scripts to accompany the gmx analysis tools

kindle_clippings icon kindle_clippings

Python repository to extract and save clippings from books on the Amazon Kindle

nmoldyn3 icon nmoldyn3

Analysis of Molecular Dynamics trajectories

pots icon pots

Scripts, codes, and plugins for use of non-standard interaction potentials in molecular dynamics codes

pysimm icon pysimm

python simulation interface for molecular modeling

votca icon votca

VOTCA's next generation build system

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