(venv) Alexs-MacBook-Pro:bin alexrockhill$ ./SLIXParameterGenerator -i ../Vervet1818_s0512_60um_SLI_090_Stack_1day.nii -o ../output/
SLI Feature Generator:
Number of threads: 4
Chosen feature maps:
Direction maps: True
Peak maps: True
Peak prominence map: True
Peak width map: True
Peak distance map: True
Optional maps: False
../Vervet1818_s0512_60um_SLI_090_Stack_1day.nii
Roi finished
^CTraceback (most recent call last):
File "./SLIXParameterGenerator", line 233, in generate_feature_maps
resulting_parameter_maps[i, current_index] = toolbox.prominence(peak_positions_high_non_centroid, roi)
File "/Users/alexrockhill/software/SLIX/venv/lib/python3.7/site-packages/SLIX-1.1-py3.7.egg/SLIX/toolbox.py", line 187, in prominence
File "/Users/alexrockhill/software/SLIX/venv/lib/python3.7/site-packages/SLIX-1.1-py3.7.egg/SLIX/toolbox.py", line 657, in normalize
File "<__array_function__ internals>", line 6, in mean
File "/Users/alexrockhill/software/SLIX/venv/lib/python3.7/site-packages/numpy/core/fromnumeric.py", line 3372, in mean
return _methods._mean(a, axis=axis, dtype=dtype,
KeyboardInterrupt
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "./SLIXParameterGenerator", line 366, in <module>
args['with_smoothing'], args['mask_threshold'])
File "./SLIXParameterGenerator", line 69, in full_pipeline
parameter_maps = generate_feature_maps(roiset, selected_methods)
File "./SLIXParameterGenerator", line 249, in generate_feature_maps
current_index += 3
File "/Users/alexrockhill/software/SLIX/venv/lib/python3.7/site-packages/pymp/__init__.py", line 122, in __exit__
self._exception_queue.put((exc_t, exc_val, self._thread_num))
File "<string>", line 2, in put
File "/Users/alexrockhill/software/anaconda3/envs/swannlab/lib/python3.7/multiprocessing/managers.py", line 819, in _callmethod
kind, result = conn.recv()
File "/Users/alexrockhill/software/anaconda3/envs/swannlab/lib/python3.7/multiprocessing/connection.py", line 250, in recv
buf = self._recv_bytes()
File "/Users/alexrockhill/software/anaconda3/envs/swannlab/lib/python3.7/multiprocessing/connection.py", line 407, in _recv_bytes
buf = self._recv(4)
File "/Users/alexrockhill/software/anaconda3/envs/swannlab/lib/python3.7/multiprocessing/connection.py", line 383, in _recv
raise EOFError
EOFError