Comments (4)
Hi Roi Shillo,
You can specify security group / subnet by adding 'security_group' : <security group id>
and 'subnet' : <subnet id>
in the config (you can use one or both of these to specify VPC. If you don't have default VPC, you'd have to specify subnet.). It's not in the documentation yet. I will try to update it soon.
Tibanna doesn't require scaling up and down. It launches an independent EC2 instance for each job with its own instance type / EBS rather than using an autoscaling feature. To use it in a large scale project, it may be helpful to request AWS for EC2 limit increase to be able to run more instances simultaneously.
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Hi All,
I encountered this exact issue when trying to set up Tibanna for the first time. Before trying to supply a subnet all my 'hello world' workflows were failing and I traced it back to it unable to start an instance due to requirement for VPC info. This only happens in aws with newer instance types like c4,m5, which is probably a default for Tibanna. When I set the instance type to something like "m1.large"
"instance_type": "m1.large",
It started working and tibanna was running the workflow as expected.
Just for kicks I tried the suggestion above and I entered an existing subnet ID created from aws VPC and then it worked without needing to change the instance type.
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@freezecoder Thanks! Good to know.
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Related Issues (20)
- Jobs sometimes fail to finish after completing execution HOT 1
- Job Runs Forever with weird Cloudwatch Logs HOT 1
- Snakemake+Tibanna should upload log files
- S3 Upload Encryption Argument HOT 11
- Minor bug when downloading files containing spaces to EC2 instance
- Tibanna1.0 errors out with Snakemake HOT 1
- Forked repo isn't used on EC2 instances even though it is declared at deployment HOT 3
- MissingInputException with Snakemake and Tibanna HOT 2
- Log Differences between 0.18.3 and 1.0+ HOT 3
- Specifying ECR AWSF_IMAGE in snakemake HOT 1
- Step functions fail for snakemake rules HOT 1
- Tibanna/Snakemake compatibility issue? HOT 4
- Docker image for 1.9.2 doesn't exist HOT 1
- AWS ending python 3.6 support for lambda functions HOT 1
- plot_metrics isn't producing some plots HOT 9
- botocore client error Rate Exceeded HOT 1
- Tibanna instance type error with snakemake HOT 29
- runtask failure : InvalidFleetConfig HOT 6
- Transfer ownership of Snakemake tibanna plugin HOT 7
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