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ncagg's Issues

TypeError processing global attributes

Issue processing attribute seen with log_level DEBUG... Is this another Python 3 strings related thing?

  File ".../ncagg/attributes.py", line 332, in process_file
    handler[0](attr_val, nc_in)
  File ".../ncagg/attributes.py", line 121, in process
    for each in re.split(", *", attr):
  File ".../python3.7/re.py", line 213, in split
    return _compile(pattern, flags).split(string, maxsplit)
TypeError: expected string or bytes-like object

Support chunksize specification from cli

Sometimes doing one-off aggregations, it's overkill to make a template, but the chunksizes in the input files are not appropriate for aggregation. It would be nice if the cli allowed some kind of chunksize specification.

ncagg issue with click version 7 dependency for progressbar

Incompatibility with Click version 7 because of progressbar. Stack trace below:

Evaluating aggregation list...
Traceback (most recent call last):
  File "/data/backup/anaconda2/bin/ncagg", line 11, in <module>
    sys.exit(cli())
  File "/data/backup/anaconda2/lib/python2.7/site-packages/click/core.py", line 764, in __call__
    return self.main(*args, **kwargs)
  File "/data/backup/anaconda2/lib/python2.7/site-packages/click/core.py", line 717, in main
    rv = self.invoke(ctx)
  File "/data/backup/anaconda2/lib/python2.7/site-packages/click/core.py", line 956, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/data/backup/anaconda2/lib/python2.7/site-packages/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "/data/backup/anaconda2/lib/python2.7/site-packages/ncagg/cli.py", line 173, in cli
    evaluate_aggregation_list(config, aggregation_list, dst, lambda: next(bar))
  File "/data/backup/anaconda2/lib/python2.7/site-packages/ncagg/aggregator.py", line 300, in evaluate_aggregation_list
    callback()
  File "/data/backup/anaconda2/lib/python2.7/site-packages/ncagg/cli.py", line 173, in <lambda>
    evaluate_aggregation_list(config, aggregation_list, dst, lambda: next(bar))
TypeError: ProgressBar object is not an iterator

Reported by Matt C. from SWPC.

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