Name: Laurent Thomas
Type: User
Company: @Luxendo
Bio: Bioimage analyst, working on image processing for microscopy, hardware interfacing and/or other DIY projects
Twitter: LauLauThom
Location: Heidelberg, Germany
Blog: https://www.linkedin.com/in/laurent-thomas-a2943980/?locale=en_US
Laurent Thomas's Projects
Fiji plugins for qualitative image annotations + analysis workflows for image-classification and data-visualization
Fiji Toolbar tool with Roi that perform measurements, are added to Manager and auto next slice
Website
OpenCV Haar cascade with non-maxima suppression
HDF5 plugin for ImageJ and Fiji.
Library allowing the use of OpenCV in ImageJ by providing converter functions
Wayne Rasband's ImageJ 1.x repository, updated once a night. To develop this code, use https://github.com/imagej/ImageJA.
Toolset providing an interactive X/Y line profile tools and horizontal/vertical profile
This repo contains the files to generate an interactive view of a feature set in the tensorflow embedding projector interface.
Wrapping jython macro script into a jar
Knime workflow to facilitate segmentation and tracking in 3D + time cell images using the TGMM 1.0 software by the Keller lab (https://www.janelia.org/lab/keller-lab).
Fiji plugins for the creation of binary and semantic masks from ROIs in the RoiManager. Works with stacks too.
This script allows to control analog and digital outputs of a NI-USB-6008 from National Instrument using the PyDAQmx module
Example of ImageJ macros for object-localization
Helper plugin providing a table to facilitate the setting of the names associated to the Roi-group integer indexes in Fiji
Image processing in Python
Simple Python script to control analog and digital outputs for a USB-3101 from Measurement Computing