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abacus-orbitals's Issues
BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
After ABACUS completes the scf calculation of the pw basis set, "BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES" appears. like this:
CG243 -4.97e-01 7.75e+00 -6.431792e+03 1.131020e-04 2.483e-06 2.593e+00
CG244 -4.97e-01 7.75e+00 -6.431792e+03 -1.326852e-04 2.277e-06 3.743e+00
CG245 -4.95e-01 7.75e+00 -6.431792e+03 -3.074012e-06 7.418e-07 2.367e+00
CG246 -4.96e-01 7.75e+00 -6.431792e+03 1.246874e-04 8.012e-07 2.347e+00
CG247 -4.93e-01 7.75e+00 -6.431792e+03 6.287470e-05 9.806e-07 3.176e+00
CG248 -4.95e-01 7.75e+00 -6.431792e+03 -2.028726e-04 8.872e-08 3.214e+00
DONE(5.919e+02 SEC) : cal_overlap_Q
DONE(6.003e+02 SEC) : cal_overlap_Sq
DONE(6.012e+02 SEC) : cal_overlap_Q
DONE(6.094e+02 SEC) : cal_overlap_Sq
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 177624 RUNNING AT cu13
= EXIT CODE: 139
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
=============================================
======================================
The corresponding test files are here, Fe.zip.
Orbital generation input file
I was conducting radial cutoff test with LCAO basis when I came into this problem. I tried to generate local orbital files of Ga, As with radial cutoff of 6 to 12 a.u., but the file I generated does not match that in the official release. It seems that I generated the orbital in the wrong way. The ORBITAL_INPUT is as follows:
#--------------------------------------------------------------------------------
EXE_mpi mpirun -np 4
EXE_pw /usr/bin/ABACUS.mpi
EXE_orbital xxx/abacus-2.2.3+/abacus-develop/tools/SIAB/SimulatedAnnealing/source/SIA_s.exe
#--------------------------------------------------------------------------------
#( In this part, the direction of the two used exe is provided )
#2.electronic calculatation
#--------------------------------------------------------------------------------
targets 31_Ga # element
ref_bands 13 # reference bands
nbands 17 # num of bands for calculate ( > reference bands)
Ecut 100 # cutoff energy (in Ry)
Rcut 9 # cutoff radius (in a.u.)
Pseudo_dir xxx/Ga/1_DZP/
Pseudo Ga_ONCV_PBE-1.0.upf
smearing_sigma 0.01 # energy range for gauss smearing (in Ry)
#--------------------------------------------------------------------------------
#( In this part , some parameters of calculating are given )
#3.structure information
#--------------------------------------------------------------------------------
Dis 1.85 2.10 2.45 3.00 4.00
#--------------------------------------------------------------------------------
#( In this part , it gives us the bond length of the reference system( in
#angstrom) )
#4.orbital calculatation
#--------------------------------------------------------------------------------
maxL 3 # the max angular momentum
Level 2 # num of levels to generate orbitals(<=5)
#(num) (the max ang) (num of S) (num of P) (num of D) (num of F) (num of G)
level1 2 1 1 1
level2 3 1 1 1 1
#--------------------------------------------------------------------------------
#( In this part, some information of orbital is given )
#5.Metropolis parameters (in most cases do not need to change)
#--------------------------------------------------------------------------------
Start_tem_S 1.0e-4 # start temperature for optimize Spillage (default 1.0e-4)
Start_tem_K 1.0e-2 # start temperature for optimize Kinetic (default 1.0e-2)
Step_S 20 # num of steps for optimize Spillage (default 20)
Step_K 15 # num of steps for optimize Kinetic (default 15)
Delta_kappa 0.01 # delta kappa (default 0.01)
#--------------------------------------------------------------------------------
#( In this part , some parameters of Metropolis is given . In most cases , they
#do not need to be changed , only when you run into a situation , that the
#Kinnetic energy is larger than the maximum value allowed , you can enlarge
#the start temperature appropritely , or you can enlarge the delta_kappa, e.g.
#start_tem_k 1.0e-2 to 5.0e-1, delta_kappa 0.01 to 0.02. more steps can make
#the orbitals better , too)
I ran the tools/generate_orbital.sh of version 2.2.3 in the directory containing the above ORBITAL_INPUT file.
Could someone provide me with the correct input files generating As and Ga's DZP/TZDP/QZDP orbital with 6-12 a.u. cutoff?
The December 13th version of ABACUS in deepmodeling/abacus-develop `develop` branch is not available
I use the December 13th version of ABACUS in deepmodeling/abacus-develop develop
branch to generate orbiatls, but it cannot work with the following error:
What is the meaning of #Ref Bands and #InputOrb ?
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