adf-ncgr Goto Github PK

archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

cactus

Official home of genome aligner based upon notion of Cactus graphs

est-sfs-helpers

forester

forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research

gcv

Federating genomes with love (and synteny derived from functional annotations)

genomeannotator

Pipeline for the identification of (coding) gene structures in draft genomes.

graphql-server

A GraphQL server that supports dynamic content in the LIS Jekyll site

haploallele_utils

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

lis_hacks

assorted quick-and-dirty scripts that have lived in too many places on too many systems

mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. Various downstream displaying and analysis tools for synteny detected using modified MCScan approach.

mpr_install

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

singlecell_paralogue_expression_scripts

Various scripts in support of analyses for "Expression partitioning of duplicate genes at single cell resolution"

snucrna_atac_scripts

scripts in support of "Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level"

tripal

The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files

virtualgenome

a microservice for serving a virtually combined genome out of individual genomes