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--doctest-modules causes all tests to be executed even when a single test is picked

Issue

When --doctest-modules is in setup.cfg, it causes all tests to be run even when a single one is picked. In addition, the selected test runs twice.

Environment

Anaconda 5.0.1 with conda update --all already run.
Pytest 3.3.0
macOS 10.13.2
Minimal Example

Directory Structure:

pytest_test
pytest_test
tests
test_pytest.py
setup.cfg
setup.cfg:

[tool:pytest]
addopts = --doctest-modules pytest_test

test_pytest.py

def test_one():
assert 1 == 1

def test_two():
assert 1 == 2

Command line:

py.test pytest_test/tests/test_pytest.py::test_two
Expected

Just test_two should be run.

Actual

test_one is run once and test_two twice.

pip-list

$ pip list
alabaster (0.7.10)
anaconda-client (1.6.6)
anaconda-navigator (1.6.10)
anaconda-project (0.8.2)
appnope (0.1.0)
appscript (1.0.1)
argh (0.26.2)
asn1crypto (0.23.0)
astroid (1.5.3)
astropy (2.0.3)
attrs (17.3.0)
Babel (2.5.1)
backports.shutil-get-terminal-size (1.0.0)
beautifulsoup4 (4.6.0)
bitarray (0.8.1)
bkcharts (0.2)
blaze (0.11.3)
bleach (2.1.1)
bokeh (0.12.13)
boto (2.48.0)
Bottleneck (1.2.1)
certifi (2017.11.5)
cffi (1.11.2)
chardet (3.0.4)
click (6.7)
cloudpickle (0.5.2)
clyent (1.2.2)
colorama (0.3.9)
conda (4.4.6)
contextlib2 (0.5.5)
coverage (4.4.2)
cryptography (2.1.4)
cycler (0.10.0)
Cython (0.27.3)
cytoolz (0.8.2)
dask (0.16.0)
datashape (0.5.4)
decorator (4.1.2)
distributed (1.20.2)
Django (2.0)
docutils (0.14)
entrypoints (0.2.3)
et-xmlfile (1.0.1)
fastcache (1.0.2)
filelock (2.0.13)
flake8 (3.5.0)
Flask (0.12.2)
Flask-Cors (3.0.3)
gevent (1.2.2)
glob2 (0.6)
gmpy2 (2.0.8)
greenlet (0.4.12)
h5py (2.7.1)
heapdict (1.0.0)
html5lib (1.0.1)
hypothesis (3.38.5)
idna (2.6)
imageio (2.2.0)
imagesize (0.7.1)
ipykernel (4.7.0)
ipython (6.2.1)
ipython-genutils (0.2.0)
ipywidgets (7.0.5)
isort (4.2.15)
itsdangerous (0.24)
jdcal (1.3)
jedi (0.11.0)
Jinja2 (2.10)
joblib (0.11)
jsonschema (2.6.0)
jupyter-client (5.1.0)
jupyter-console (5.2.0)
jupyter-core (4.4.0)
jupyterlab (0.30.6)
jupyterlab-launcher (0.6.0)
lazy-object-proxy (1.3.1)
livereload (2.5.1)
llvmlite (0.21.0)
locket (0.2.0)
lxml (4.1.1)
MarkupSafe (1.0)
matplotlib (2.1.1)
mccabe (0.6.1)
mistune (0.8.1)
mpmath (1.0.0)
msgpack-python (0.4.8)
multipledispatch (0.4.9)
navigator-updater (0.1.0)
nbconvert (5.3.1)
nbformat (4.4.0)
networkx (2.0)
nltk (3.2.5)
nose (1.3.7)
notebook (5.2.2)
numba (0.36.2)
numexpr (2.6.4)
numpy (1.13.3)
numpydoc (0.7.0)
odo (0.5.1)
olefile (0.44)
openpyxl (2.4.9)
packaging (16.8)
pandas (0.21.1)
pandocfilters (1.4.2)
parso (0.1.1)
partd (0.3.8)
path.py (10.5)
pathlib2 (2.3.0)
pathtools (0.1.2)
patsy (0.4.1)
pep8 (1.7.1)
pexpect (4.3.0)
pickleshare (0.7.4)
Pillow (4.3.0)
pip (9.0.1)
pkginfo (1.4.1)
pluggy (0.6.0)
ply (3.10)
pockets (0.5.1)
port-for (0.3.1)
prompt-toolkit (1.0.15)
psutil (5.4.1)
ptyprocess (0.5.2)
py (1.5.2)
pycodestyle (2.3.1)
pycosat (0.6.3)
pycparser (2.18)
pycrypto (2.6.1)
pycurl (7.43.0)
pyflakes (1.5.0)
Pygments (2.2.0)
pylint (1.7.4)
Pympler (0.5)
pyodbc (4.0.21)
pyOpenSSL (17.5.0)
pyparsing (2.2.0)
PySocks (1.6.7)
pytest (3.3.0)
pytest-cov (2.5.1)
pytest-flake8 (0.9.1)
pytest-runner (3.0)
python-dateutil (2.6.1)
pytz (2017.3)
PyWavelets (0.5.2)
PyYAML (3.12)
pyzmq (16.0.3)
QtAwesome (0.4.4)
qtconsole (4.3.1)
QtPy (1.3.1)
requests (2.18.4)
rope (0.10.7)
ruamel-yaml (0.11.14)
scikit-image (0.13.1)
scikit-learn (0.19.1)
scipy (1.0.0)
seaborn (0.8.1)
setuptools (36.6.0)
simplegeneric (0.8.1)
singledispatch (3.4.0.3)
six (1.11.0)
snakeviz (0.4.2)
snowballstemmer (1.2.1)
sortedcollections (0.5.3)
sortedcontainers (1.5.7)
sparse (0.1.1, /Users/hameerabbasi/PycharmProjects/sparse)
Sphinx (1.6.5)
sphinx-autobuild (0.7.1)
sphinx-rtd-theme (0.2.4)
sphinxcontrib-napoleon (0.6.1)
sphinxcontrib-websupport (1.0.1)
sphobjinv (1.0)
spyder (3.2.4)
SQLAlchemy (1.1.15)
statsmodels (0.8.0)
sympy (1.1.1)
tables (3.4.2)
tblib (1.3.2)
terminado (0.6)
testpath (0.3.1)
toolz (0.8.2)
tornado (4.5.2)
traitlets (4.3.2)
typing (3.6.2)
unicodecsv (0.14.1)
urllib3 (1.22)
watchdog (0.8.3)
wcwidth (0.1.7)
webencodings (0.5.1)
Werkzeug (0.12.2)
wheel (0.30.0)
widgetsnbextension (3.0.8)
wrapt (1.10.11)
xlrd (1.1.0)
XlsxWriter (1.0.2)
xlwings (0.11.4)
xlwt (1.3.0)
zict (0.1.3)
zope.interface (4.4.3)

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