Comments (3)
sa501428
commented on August 16, 2024
If the file includes these normalizations, then yes. Just use INTER_KR or INTER_SCALE for the inter-balancing or GW_KR or GW_SCALE for genome-wide balancing. If you call it with KR or SCALE, it will use the intra-chromosomal balancing for the 2 chromosomes involved.
If the file doesn't include the normalizations, you'll want to balance the matrices with addnorm.
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sa501428
commented on August 16, 2024
What flavor/language are you working with?
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mellofariam
commented on August 16, 2024
I'm working with Python. I'll try that out! Thank you!
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