This repository contains the data and analysis for a study on colon cancer, focusing on comparing gene expression between patients who relapsed and those who did not. This project was part of [your course name, institution, or similar].
Aizhan-TTestHW-01-Logic.pdf
: Project analysis plan.Aizhan-Uteubayeva-TTestHW-02-a-Code.Rmd
: R Markdown script for analysis.Aizhan-Uteubayeva-TTestHW-02-b-Code.html
: Compiled HTML from R Markdown.Aizhan-Uteubayeva-TTestHW-04-Output.csv
: T-test results.Aizha-Uteubayeva-TTestHW-05-Top20Genes.tsv
: Top 20 differentially expressed genes.Aizhan_Uteubayeva_ClinBaseIDs.tsv
: Exported patient IDs from clinical data (baseline group).Aizhan_Uteubayeva_ClinCompIDs.tsv
: Exported patient IDs from clinical data (comparison group).Aizhan_Uteubayeva_GeneExpBaseIDs.tsv
: Exported patient IDs from gene expression data (baseline group).Aizhan_Uteubayeva_GeneExpCompIDs.tsv
: Exported patient IDs from gene expression data (comparison group).Aizhan_Uteubayeva_FeatureIDs.tsv
: Exported feature names.StudentName_Checking.xlsx
: Excel file for comparison of patient IDs.
Details on how to run the R Markdown file and reproduce the analysis are provided within the script.
Guidelines for how to contribute to this project are provided.
MIT License
Copyright (c) 2024 Aizhan Uteubayeva
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
- Aizhan Uteubayeva - Initial work