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synthea-asthma-patients's Introduction

Team Asthma Project Analysis

Project Overview

This project, conducted by Team Asthma, utilizes Synthea-generated datasets to mirror Medicaid and Medicare patients, focusing on asthma-related analysis. The findings and methodologies are detailed through R Markdown, which integrates R and SQL for a comprehensive data analysis experience.

Files

The repository contains the following file:

  • Final_Project_Team_Asthma_code.Rmd - An R Markdown document that includes all analyses, visualizations, and findings related to asthma. It incorporates SQL queries for data manipulation and analysis.

Requirements

To run the R Markdown file with integrated SQL queries, you will need R, RStudio, and appropriate SQL database connection packages installed on your computer. Here’s how to set up your environment:

  1. Install R:

  2. Install RStudio:

  3. Install Required R and SQL Packages:

    • Open RStudio and install the required packages by running the following commands in the R console:
      install.packages(c("tidyverse", "lubridate", "ggplot2", "dplyr", "knitr", "DBI", "RSQLite"))
    • Ensure you replace RSQLite with the package that matches your SQL database system, such as RMySQL, RODBC, or others.

Running the Analysis

To view and run the analysis:

  1. Open RStudio.
  2. Go to File > Open File and select the Final_Project_Team_Asthma_code.Rmd file.
  3. Run the R Markdown file by clicking on Knit or use the shortcut Ctrl + Shift + K to generate a document that includes both content and output, such as plots and SQL query results.

Contributing

Contributions to this project are welcome. Here are some ways you can contribute:

  • Enhancing the analysis through more complex SQL queries or R scripts.
  • Improving visualizations and data interpretations.
  • Updating and maintaining the SQL database connections.

Authors

  • Aizhan Uteubayeva

License

This project is licensed under the MIT License - see the LICENSE.md file for details.

Acknowledgments

  • Thanks to all the data providers and supporters of asthma research.
  • Special thanks to our academic and industry mentors who guided this project.
  • Acknowledgment to the Synthea team for providing a realistic synthetic data generator used to mirror Medicaid and Medicare patient data.

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