Giter VIP home page Giter VIP logo

ait5 / cnapp Goto Github PK

View Code? Open in Web Editor NEW
18.0 18.0 7.0 19 MB

CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-friendly interface. The software uses segmented data from either aCGH, SNP-array, whole-exome sequencing or whole-genome sequencing to assess sample profiles and CNA levels, establishing associations with molecular and clinical features. CNApp has three main sections: Re-Seg & Score, Region profile and Classifier model

License: Other

HTML 4.22% R 95.48% CSS 0.27% JavaScript 0.04%

cnapp's People

Contributors

ait5 avatar

Stargazers

 avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar

Watchers

 avatar  avatar

cnapp's Issues

ubuntu install, and issues

Hi,

interesting looking app.

On ubuntu 16.04 I needed these packages to install everything successfully.

sudo apt install libmariadb-client-lgpl-dev

sudo apt install libv8-3.14-dev

Unfortunately, selecting the demo data doesn't do anything, and the whole app is kind of grey so I must be missing other packages. R-3.4.4

Any ideas ?

Service Unavailable

Dear CNApp developers,

Thank you for creating such a useful tool. I used CNApp (https://tools.idibaps.org/CNApp/) a few weeks ago and it worked properly. But, since yesterday, I have been trying to use it , but I keep receiving the error message:

**Service Unavailable
The server is temporarily unable to service your request due to maintenance downtime or capacity problems. Please try again later.

Apache/2.4.29 (Ubuntu) Server at tools.idibaps.org Port 443**

Could you please help me with this issue? Thank you.

CNApp on non-human genomes

I think CNApp is a really helpfull tool. Any way it can support also non-human genomes?

Thank you!
Serena

Plotting X and Y chromosomes

Hello,
I'm having trouble implementing data with X and Y chrosomes CNAs. I've used either X and Y or 23 and 24 as identifier without any luck.
Is it possible to plot data with theses chromosomes?

CNApp web to mark genes on frequency plots

First of all, thank you so much for developing CNApp web! A very nice app that performs all tasks. However, I was wondering if I can somehow select certain genes generated in the gene list when we perform region profiling and mark them on the plot? I wanted to check whether they have been gained or lost.

Thanks once again and I look forward to your response!

Shweta

CNApp webtool server disconnect

Hi,

Thank you for developing the App, its really useful.
However recently when I try to upload data, the server is disconnected and the upload fails.
Is there any alternative way I can try to upload my data?

Thank you!

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.