ubuntu 20.04 unable to install using cpan or cpanm about geo-gdal-ffi HOT 10 CLOSED

Sorry, there is only one version of perl. I just pasted the path from my Ubuntu 18.04 system (I mentioned that it also has the same issue). Ubuntu 18.04 has perl version 5.26.1. Ubuntu 20.04 has perl version 5.30.0.

I should have posted this before:
locate libproj.so.25
/usr/lib/x86_64-linux-gnu/libproj.so.25
/usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/share/dist/Alien-proj/lib/libproj.so.25
/usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/share/dist/Alien-proj/lib/libproj.so.25.9.0.0

So false alarm there. I will post the logs you mentioned next.

from geo-gdal-ffi.

This is probably libgdal.so under Alien::gdal not finding its dependent dynamic lib files.

Can you please run this command and report its results?

perl -MAlien::gdal -E'say system ("ldd", Alien::gdal->dist_dir . "/lib/libgdal.so")'

from geo-gdal-ffi.

See also: shawnlaffan/perl-alien-gdal#22

from geo-gdal-ffi.

Sure.perl -MAlien::gdal -E'say system ("ldd", Alien::gdal->dist_dir . "/lib/libgdal.so")'
linux-vdso.so.1 (0x00007ffee2f36000)
libcrypto.so.1.1 => /lib/x86_64-linux-gnu/libcrypto.so.1.1 (0x00007f5091358000)
libgeos_c.so.1 => /lib/x86_64-linux-gnu/libgeos_c.so.1 (0x00007f509131d000)
libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007f50912ef000)
libnetcdf.so.15 => /lib/x86_64-linux-gnu/libnetcdf.so.15 (0x00007f50911ca000)
libhdf5_serial.so.103 => /lib/x86_64-linux-gnu/libhdf5_serial.so.103 (0x00007f5090e4d000)
libproj.so.25 => not found
libsqlite3.so.0 => /usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/share/dist/Alien-sqlite/lib/libsqlite3.so.0 (0x00007f5090d2b000)
libtiff.so.5 => /usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/share/dist/Alien-libtiff/lib/libtiff.so.5 (0x00007f5090cab000)
libjpeg.so.8 => /lib/x86_64-linux-gnu/libjpeg.so.8 (0x00007f5090c26000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f5090c0a000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f5090be7000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f5090be1000)
libpcre2-8.so.0 => /lib/x86_64-linux-gnu/libpcre2-8.so.0 (0x00007f5090b4f000)
libcurl-gnutls.so.4 => /lib/x86_64-linux-gnu/libcurl-gnutls.so.4 (0x00007f5090ac0000)
libstdc++.so.6 => /lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f50908de000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f509078f000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f509059d000)
/lib64/ld-linux-x86-64.so.2 (0x00007f5092a24000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f5090582000)
libgeos-3.9.1.so => /lib/x86_64-linux-gnu/libgeos-3.9.1.so (0x00007f509038b000)
libhdf5_serial_hl.so.100 => /lib/x86_64-linux-gnu/libhdf5_serial_hl.so.100 (0x00007f5090364000)
libsz.so.2 => /lib/x86_64-linux-gnu/libsz.so.2 (0x00007f509035f000)
libnghttp2.so.14 => /lib/x86_64-linux-gnu/libnghttp2.so.14 (0x00007f5090336000)
libidn2.so.0 => /lib/x86_64-linux-gnu/libidn2.so.0 (0x00007f5090315000)
librtmp.so.1 => /lib/x86_64-linux-gnu/librtmp.so.1 (0x00007f50902f3000)
libssh.so.4 => /lib/x86_64-linux-gnu/libssh.so.4 (0x00007f5090285000)
libpsl.so.5 => /lib/x86_64-linux-gnu/libpsl.so.5 (0x00007f5090272000)
libnettle.so.7 => /lib/x86_64-linux-gnu/libnettle.so.7 (0x00007f5090238000)
libgnutls.so.30 => /lib/x86_64-linux-gnu/libgnutls.so.30 (0x00007f5090062000)
libgssapi_krb5.so.2 => /lib/x86_64-linux-gnu/libgssapi_krb5.so.2 (0x00007f5090015000)
libldap_r-2.4.so.2 => /lib/x86_64-linux-gnu/libldap_r-2.4.so.2 (0x00007f508ffbd000)
liblber-2.4.so.2 => /lib/x86_64-linux-gnu/liblber-2.4.so.2 (0x00007f508ffac000)
libbrotlidec.so.1 => /lib/x86_64-linux-gnu/libbrotlidec.so.1 (0x00007f508ff9e000)
libaec.so.0 => /lib/x86_64-linux-gnu/libaec.so.0 (0x00007f508ff95000)
libunistring.so.2 => /lib/x86_64-linux-gnu/libunistring.so.2 (0x00007f508fe13000)
libhogweed.so.5 => /lib/x86_64-linux-gnu/libhogweed.so.5 (0x00007f508fdda000)
libgmp.so.10 => /lib/x86_64-linux-gnu/libgmp.so.10 (0x00007f508fd56000)
libp11-kit.so.0 => /lib/x86_64-linux-gnu/libp11-kit.so.0 (0x00007f508fc20000)
libtasn1.so.6 => /lib/x86_64-linux-gnu/libtasn1.so.6 (0x00007f508fc0a000)
libkrb5.so.3 => /lib/x86_64-linux-gnu/libkrb5.so.3 (0x00007f508fb2d000)
libk5crypto.so.3 => /lib/x86_64-linux-gnu/libk5crypto.so.3 (0x00007f508fafa000)
libcom_err.so.2 => /lib/x86_64-linux-gnu/libcom_err.so.2 (0x00007f508faf3000)
libkrb5support.so.0 => /lib/x86_64-linux-gnu/libkrb5support.so.0 (0x00007f508fae4000)
libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007f508fac8000)
libsasl2.so.2 => /lib/x86_64-linux-gnu/libsasl2.so.2 (0x00007f508faab000)
libgssapi.so.3 => /lib/x86_64-linux-gnu/libgssapi.so.3 (0x00007f508fa66000)
libbrotlicommon.so.1 => /lib/x86_64-linux-gnu/libbrotlicommon.so.1 (0x00007f508fa41000)
libffi.so.7 => /lib/x86_64-linux-gnu/libffi.so.7 (0x00007f508fa35000)
libkeyutils.so.1 => /lib/x86_64-linux-gnu/libkeyutils.so.1 (0x00007f508fa2e000)
libheimntlm.so.0 => /lib/x86_64-linux-gnu/libheimntlm.so.0 (0x00007f508fa22000)
libkrb5.so.26 => /lib/x86_64-linux-gnu/libkrb5.so.26 (0x00007f508f98f000)
libasn1.so.8 => /lib/x86_64-linux-gnu/libasn1.so.8 (0x00007f508f8e6000)
libhcrypto.so.4 => /lib/x86_64-linux-gnu/libhcrypto.so.4 (0x00007f508f8ae000)
libroken.so.18 => /lib/x86_64-linux-gnu/libroken.so.18 (0x00007f508f895000)
libwind.so.0 => /lib/x86_64-linux-gnu/libwind.so.0 (0x00007f508f86b000)
libheimbase.so.1 => /lib/x86_64-linux-gnu/libheimbase.so.1 (0x00007f508f859000)
libhx509.so.5 => /lib/x86_64-linux-gnu/libhx509.so.5 (0x00007f508f80b000)
libcrypt.so.1 => /lib/x86_64-linux-gnu/libcrypt.so.1 (0x00007f508f7ce000)
0

I see, Alien::gdal can not locate libproj.so.25

locate libproj.so.25
/usr/local/lib/x86_64-linux-gnu/perl/5.26.1/auto/share/dist/Alien-proj/lib/libproj.so.25

This worked:
export LD_LIBRARY_PATH=/lib:/usr/lib:/usr/local/lib:/usr/local/lib/x86_64-linux-gnu/perl/5.26.1/auto/share/dist/Alien-proj/lib;sudo ldconfig

So I did this:
ln -s /usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/share/dist/Alien-proj/lib/libproj.so.25 /lib/x86_64-linux-gnu/libproj.so.25

Then I reinstalled Geo::GDAL::FFI and everything is good!
Thanks.

from geo-gdal-ffi.

That works around the issue, but linking a perl alien into your /lib dir is pretty risky and not future proof.

Alien::gdal should be finding this file. Can you run this command?

perl -MAlien::gdal -MAlien::patchelf -E'say Alien::patchelf->patchelf("--print-rpath", Alien::gdal->dist_dir . "/lib/libgdal.so")'

If Alien::patchelf is not installed then it can be installed using cpanm, and its absence might be the reason for the original issue.

from geo-gdal-ffi.

Sure...
perl -MAlien::gdal -MAlien::patchelf -E'say Alien::patchelf->patchelf("--print-rpath", Alien::gdal->dist_dir . "/lib/libgdal.so")'
/usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/share/dist/Alien-sqlite/lib:/usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/share/dist/Alien-libtiff/lib
0

locate Alien/patchelf
/usr/local/lib/x86_64-linux-gnu/perl/5.30.0/Alien/patchelf.pm
/usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/Alien/patchelf
/usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/Alien/patchelf/.packlist
/usr/local/lib/x86_64-linux-gnu/perl/5.30.0/auto/Alien/patchelf/patchelf.txt

Also installed Alien::gdal on another system I have (Ubuntu 18.04.6 LTS) and it also was not able to find libproj.so.25. It was in the same location and adding the path to LD_LIBRARY_PATH also worked on that system.

from geo-gdal-ffi.

It looks like you have multiple perls on your system, or the vestiges of an older perl (5.26). It's important not to mix perls as you can get weird interaction effects that are hard to diagnose.

What do you get for these calls?

perl -v
perl -MAlien::gdal -E'say Alien::gdal->dist_dir'
perl -MAlien::proj -E'say Alien::proj->dist_dir'
perl -MAlien::proj -E'say Alien::proj->install_type'
ls `perl -MAlien::proj -E'say Alien::proj->dist_dir'`/lib

WRT the patchelf call, Alien::gdal should be using Alien::patchelf to adjust the rpath of the libgdal.so file so it can find the libproj.so file. The fact that it only includes paths for tiff and sqlite suggests it has not been done.

What does the build log look like for Alien::gdal?

cpanm --look Alien::gdal
perl -v
perl Makefile.PL
make test

(Please make sure to embed the logs in the triple-backtick quotes so they are not treated as markdown. It would also help to put the build log inside a collapsible section - see https://codex.so/collapsed-block-for-github-markdown ).

from geo-gdal-ffi.

...actually, attaching the build log as a file will avoid all the formatting issues.

from geo-gdal-ffi.

@yelnats - have you had a chance to generate the logs?

from geo-gdal-ffi.

@yelnats - It looks like this was an issue with Alien::gdal where the rpath updates were overridden before installation.

shawnlaffan/perl-alien-gdal@1d040bc

That is now hopefully fixed in version 1.31 which has been released to CPAN.

from geo-gdal-ffi.