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nifti-gridview's Introduction

NIfTI-gridview

Visualization of medical image is sometimes painful task for radiologist writing scientific papers. This software aims to provide an easy and GUI way to do so.

Prequisits

  • SimpleITK
  • PyQt5
  • Pyside2
  • cachetool

You can also chose to install from anaconda env:

conda env create -f NIfTi-Gridview.yml -n NIfTi-Gridview

Preview

Demo_1

Todo

  • More documentations
  • Chache displayed data.
  • Save images to file.
  • Allow specifying ID globbers with regex string.
  • Allow tuning display window level.
  • Allow changing display ROI, including W, H and position.
  • Support multiple label classes in one label map.
  • Removing loaded labels.
  • Merge with torchio is desirable
  • Save/Load scene.

nifti-gridview's People

Contributors

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nifti-gridview's Issues

UI issue when image is opened with segmentation

Image display data refuses to update when an image is opened with segmentation. The image must be reselected in the 'Files' tab in order to allow display data to be updated.

Capturenew
Image file is deselected after loading segmentation

Steps to reproduce

  1. Open image
  2. Open segmentation
  3. Move sliders for display size or display center position

This line in mainwindow.py partially contributes to this issue
Capturemainwindow

Switch image fails when more than one set of segmentation is loaded

Description

The image is not updated when different MRI file is selected after specifying more than one set of segmentation

Reproduce

  1. Open image folder
  2. Open segmentation folder
  3. Select one of the case with segmentation available
  4. Play with the sliders for zoom/pan
  5. Open another segmentation folder
  6. Select another case --> nothing happens (but the window is not crashed)

Error messages

Original exception was:
Traceback (most recent call last):
  File "C:\Users\king ra\PycharmProjects\NIfTI-gridview\nifti_gridview\ngv_gui\mainwindow.py", line 319, in _update_image_data
    config['segment'].append(seg_temp[display_lrange:display_urange + 1])
TypeError: 'NoneType' object is not subscriptable

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