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rare case of a vet turned bioinformatician interested in multi-omics, cancer and open-source software.

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gxf2bed's Issues

Error parsing attribute

Hey! Love the concept going on here and wanted to replace some perl scripts in some pipelines with the tool.

I went to make a nf-core module for it and just got errors though.

nf-core/modules#4951

Details

thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"thread '
<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"thread '
<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33thread ':
<unnamed>called `Result::unwrap()` on an `Err` value: "Error parsing attribute"' panicked at 
src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"
thread '<unnamed>' panicked at src/main.rs:197:33:
called `Result::unwrap()` on an `Err` value: "Error parsing attribute"

Reproduced it locally with gxf2bed -i genome.gff3 -o genome.bed as well.

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