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gym

A toolkit for developing and comparing reinforcement learning algorithms.

hamronization

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

honors_thesis_code

Code dump for Honor's thesis. Includes SVM optimizaiton, data processing with pandas, neural networks with Keras

human-genome-variants-demo

A demonstration of public database API queries and data organisation.

image-generative-model

Experiments with generative models for creating images.

improving-dna-classification-vae

indizio

A visual analytics tool to investigate correlated data structures using heatmaps, networks, and network statistics.

interactive_asv_table_summary

View and compare several QIIME2 ASV feature frequency table results. Uses Dash and Plotly to generate interactive charts.

js-data-table

A table for manipulating data output from a genomics tool. Temporary repo, will delete after incorporating into tool

meetingmakr

A tiny Django project for choosing presenters in a meeting. Mostly an exercise in learning how AJAX can allow CRUD forms in modal.

microbiome_interactive_classification

Dash application for visual analytics of microbiome ML benchmark datasets from Knight et al. Proper citations soon,

multithreaded-sudoku-checker

A C learning exercise that uses multiple threads to validate a Sudoku solution, read as textfile.

my-hours

A simple Android app used to keep track of hours payable in a two week pay period.

mytimes

namrbourhood

Investigating the genomic context of focal genes across assembled genomes

pagel2graph

Tools for converting Pagel results to GraphML format and subsequently filter the GraphML.

password-validator

A simple project to explore unit testing in Android Studio.

peppan

Phylogeny Enhanded Prediction of PAN-genome

prj-rev-bwfs-dasmoto

prj-rev-bwfs-tea-cozy

proccess-creation-exercise

A learning exercise simulating a POSIX system terminal whereby commands are executed by a child process.

psyence

Mostly a test repo for deploying web applications.

quorem

QUOR'EM: Query, Update, Organize, and Render 'EM

sentencoding

Sentence encoder and training code for Mean-Max AAE

sequence-embedding

Representation learning of prokaryotic marker genes. Code for training byte-pair encoding tokenizer, DNA sequence language model, and 16S sequence vector embeddings.

stallmanquest

An inside joke gone too far.

tpg_breakout

Basic implementation of Malcom Heywood's Tangled Program Graph for game playing agents

tpg_spaceinvaders

Implementation of Tangled Program Graph game playing agent, along with several experiments of state preprocessing.

training_resources

Collation of useful training materials

unix-unique-command

a C program which uses a linked list to store input from stdin and output the unique strings encountered to stdout.